PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00029.122
Common NameAMTR_s00029p00112130, LOC18437644
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 226aa    MW: 25024.4 Da    PI: 6.7781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00029.122genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-1069115554
                                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                               +  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  A + +++L
  evm_27.model.AmTr_v1.0_scaffold00029.122  69 KACREKMRRDRLNDRFLELGSILDPG---RPPKADKATILSDAARALSQL 115
                                               678**********************8...89**************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.18264115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-768120No hitNo description
PfamPF000104.8E-869115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-870121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-1270138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1171137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEEQSWVLDI DTINEVAGSD AQFYLSEGYG NLQSTSWDID CINANAVGPE QTSSRKRARD  60
ESCCAPGSKA CREKMRRDRL NDRFLELGSI LDPGRPPKAD KATILSDAAR ALSQLRIEAQ  120
KLKEANEKLQ ETIKDLKVEK NELRDEKTRL KADKERLEQQ VKAMSMAPTG FIPHPAAIHA  180
FAAPSQVGGA KAVPYSGYPA MTMWQWMPPT VVDTSQDHKL RPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847910.11e-168PREDICTED: transcription factor ILR3
RefseqXP_011624665.11e-168PREDICTED: transcription factor ILR3
SwissprotQ9FH374e-72ILR3_ARATH; Transcription factor ILR3
TrEMBLW1PP381e-168W1PP38_AMBTC; Uncharacterized protein
STRINGVIT_12s0059g02650.t015e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7551766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-68bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]